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Ch. 19 - Epigenetics
Chapter 18, Problem 23

Amino acids are classified as positively charged, negatively charged, or electrically neutral.

Which category includes lysine?

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1
Identify the chemical structure of lysine, focusing on its side chain.
Recognize that lysine has an amino group in its side chain.
Understand that the presence of an additional amino group can accept a proton, giving lysine a positive charge at physiological pH.
Classify lysine based on its ability to carry a positive charge due to its side chain.
Conclude that lysine is categorized as a positively charged amino acid.

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Key Concepts

Here are the essential concepts you must grasp in order to answer the question correctly.

Amino Acid Classification

Amino acids are organic compounds that serve as the building blocks of proteins. They are classified based on the properties of their side chains (R groups) into three categories: positively charged (basic), negatively charged (acidic), and electrically neutral (nonpolar or polar). This classification is crucial for understanding protein structure and function.
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Positively Charged Amino Acids

Positively charged amino acids, also known as basic amino acids, have side chains that contain amine groups, which can accept protons (H+ ions) at physiological pH. This results in a net positive charge. Common examples include lysine, arginine, and histidine, which play important roles in protein interactions and stability.
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Positional Cloning

Lysine

Lysine is an essential amino acid classified as positively charged due to its side chain containing an amino group that can be protonated. It is crucial for protein synthesis, hormone production, and calcium absorption. Lysine's positive charge contributes to its interactions with negatively charged molecules, influencing protein structure and function.
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Histone Protein Modifications
Related Practice
Textbook Question

From the data in Table 19.3, draw up a list of histone H3 modifications associated with gene activation. Then draw up a list of H3 modifications associated with repression.

Are there any overlaps on the lists?

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Textbook Question

From the data in Table 19.3, draw up a list of histone H3 modifications associated with gene activation. Then draw up a list of H3 modifications associated with repression.

Are these overlaps explained by different modifications?

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Textbook Question

From the data in Table 19.3, draw up a list of histone H3 modifications associated with gene activation. Then draw up a list of H3 modifications associated with repression.

If not, how can you reconcile these differences?

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Textbook Question

Amino acids are classified as positively charged, negatively charged, or electrically neutral.

How does this property of lysine allow it to interact with DNA?

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Textbook Question

Amino acids are classified as positively charged, negatively charged, or electrically neutral.

How does acetylation of lysine affect its interaction with DNA, and how is this related to the activation of gene expression?

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Textbook Question

A particular type of anemia in humans, called β-thalassemia, results from a severe reduction or absence of the normal β-globin chain of hemoglobin. However, the γ-globin chain, normally only expressed during fetal development, can functionally substitute for β-globin. A variety of studies have explored the use of the nucleoside 5-azacytidine for the expression of γ-globin in adult patients with β-thalassemia.

Explain why this drug may also have some adverse side effects.

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