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Ch.26 Nucleic Acids and Protein Synthesis
Chapter 26, Problem 2611

(a) DNA and RNA, like proteins, can be denatured to produce unfolded or uncoiled strands. Heating DNA to what is referred to as its “melting temperature” denatures it (the two strands of the double helix become separated). Why does a longer strand of DNA have a higher melting temperature than a shorter one?

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1
Understand that DNA melting temperature is the temperature at which half of the DNA strands are in the double-helix state and half are in the 'melted' single-strand state.
Recognize that the stability of the DNA double helix is primarily due to hydrogen bonds between complementary base pairs (A-T and G-C) and stacking interactions between adjacent base pairs.
Note that longer DNA strands have more base pairs, which means more hydrogen bonds and stacking interactions, contributing to greater overall stability.
Consider that more energy (in the form of heat) is required to break the additional hydrogen bonds and disrupt the stacking interactions in longer DNA strands, leading to a higher melting temperature.
Conclude that the increased number of interactions in longer DNA strands results in a higher melting temperature compared to shorter strands.

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Key Concepts

Here are the essential concepts you must grasp in order to answer the question correctly.

Melting Temperature (Tm)

The melting temperature (Tm) of DNA is the temperature at which half of the DNA strands are in the double-helix state and half are in the 'melted' single-strand state. Tm is influenced by the length of the DNA strands and their nucleotide composition, particularly the number of guanine-cytosine (GC) pairs, which form three hydrogen bonds compared to the two formed by adenine-thymine (AT) pairs.
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DNA Strand Length

Longer DNA strands have more base pairs, which increases the number of hydrogen bonds holding the two strands together. As a result, more energy (in the form of heat) is required to break these bonds and separate the strands, leading to a higher melting temperature for longer DNA compared to shorter strands.
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Hydrogen Bonding

Hydrogen bonds are weak interactions that occur between complementary base pairs in DNA. The stability of the double helix is significantly affected by the number of GC pairs, which contribute more hydrogen bonds than AT pairs. Therefore, the overall stability and melting temperature of DNA are higher when there are more GC pairs, especially in longer strands.
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