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Ch. 21 - Genomic Analysis
Chapter 20, Problem 20

In Section 21.10 we briefly discussed the Human Proteome Map (HPM). An interactive Web site for the HPM is available at http://www.humanproteomemap.org. Visit this site, and then answer the questions in parts (a) and (b) and complete part (c). How many proteins were identified in this project?

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1
Visit the Human Proteome Map website at http://www.humanproteomemap.org.
Navigate to the section of the website that provides an overview or summary of the project.
Look for information or a summary that mentions the total number of proteins identified in the project.
If available, check any published papers or reports linked on the website that might provide detailed results of the project.
Note the number of proteins identified as mentioned in the relevant section or document.

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Key Concepts

Here are the essential concepts you must grasp in order to answer the question correctly.

Human Proteome Map (HPM)

The Human Proteome Map (HPM) is a comprehensive resource that catalogs the proteins expressed in human tissues and cells. It aims to provide insights into the complexity of the human proteome, which is the entire set of proteins produced by the human genome. Understanding the HPM is crucial for studying protein functions, interactions, and their roles in health and disease.
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Proteomics

Proteomics is the large-scale study of proteins, particularly their functions and structures. It involves techniques such as mass spectrometry and two-dimensional gel electrophoresis to analyze protein expression, modifications, and interactions. This field is essential for understanding biological processes and can lead to advancements in medical research and drug development.
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Protein Identification

Protein identification refers to the methods used to determine the identity of proteins in a sample. This process often involves comparing experimental data against databases of known protein sequences. Accurate protein identification is vital for understanding cellular functions and mechanisms, as well as for applications in biotechnology and clinical diagnostics.
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Related Practice
Textbook Question

Metagenomics studies generate very large amounts of sequence data. Provide examples of genetic insight that can be learned from metagenomics.

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Textbook Question

What are DNA microarrays? How are they used?

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Textbook Question
Annotation of the human genome sequence reveals a discrepancy between the number of protein-coding genes and the number of predicted proteins actually expressed by the genome. Proteomic analysis indicates that human cells are capable of synthesizing more than 100,000 different proteins and perhaps three times this number. What is the discrepancy, and how can it be reconciled?
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Textbook Question
In Section 21.10 we briefly discussed the Human Proteome Map (HPM). An interactive Web site for the HPM is available at http://www.humanproteomemap.org. Visit this site, and then answer the questions in parts (a) and (b) and complete part (c). How many fetal tissues were analyzed?
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Textbook Question
In Section 21.10 we briefly discussed the Human Proteome Map (HPM). An interactive Web site for the HPM is available at http://www.humanproteomemap.org. Visit this site, and then answer the questions in parts (a) and (b) and complete part (c). Use the 'Query' tab and select the 'Gene family' dropdown menu to do a search on the distribution of proteins encoded by a pathway of interest to you. Search in fetal tissues, adult tissues, or both.
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Textbook Question
Researchers have compared candidate loci in humans and rats in search of loci in the human genome that are likely to contribute to the constellation of factors leading to hypertension [Stoll, M., et al. (2000). Genome Res. 10:473–482]. Through this research, they identified 26 chromosomal regions that they consider likely to contain hypertension genes. How can comparative genomics aid in the identification of genes responsible for such a complex human disease? The researchers state that comparisons of rat and human candidate loci to those in the mouse may help validate their studies. Why might this be so?
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