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Ch. 21 - Genomic Analysis

Chapter 20, Problem 20

In Section 21.10 we briefly discussed the Human Proteome Map (HPM). An interactive Web site for the HPM is available at http://www.humanproteomemap.org. Visit this site, and then answer the questions in parts (a) and (b) and complete part (c). How many proteins were identified in this project?

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Hi everyone. Let's get our next question. According to the human proteome map? H P M. What is the approximate number of protein coding genes present in the human genome? So let's recall what a protium is that up here and the protium would be the entire complement of proteins that can be expressed by a cell tissue or organism. So after the human genome was mapped, the next school became to map the human protium. You have all the genes there and the human genome. Well what are all those proteins that are expressed by that genome? And of course we know that's very complicated because at different stages of development, different bodily tissues, different proteins are expressed. You can have things like alternate splicing that allow a single gene region to code for different versions of a protein. So when we look at the website w w w human proteome app dot org, you can look up information on this human proteome app and access it. Um that was mapped in 2014 was when it was first published. And this website tells us that in that map They have over 17,000 genes, that makes up more than 84% of the human protein coding genes. So looking at our answer choices here, we can go ahead and eliminate two million and one million as being way off in terms of scale here and then we have choice B 15,000 choice D 20,000 They have identified 17,000 protein coding genes. Um but it says that this makes about 84%. So the actual number of protein coding genes would be larger than 17,000. So that leads us to choice the approximately 20,000 protein coding genes present in the human genome. And it's a little bit mind boggling to consider from the same website that these 20,000 or so protein coding genes result in 200 over 290,000 peptide sequences that they identified in this project. So that kind of gives a feel for how the number of proteins possible with the different alternate expressions from single genes is quite large. So that's kind of an interesting comparison. But again, according to the human proteome app, what is the approximate number of protein coding genes present in human genome? And we have choice d 20,000. See you in the next video?
Related Practice
Textbook Question

Metagenomics studies generate very large amounts of sequence data. Provide examples of genetic insight that can be learned from metagenomics.

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Textbook Question

What are DNA microarrays? How are they used?

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Textbook Question
Annotation of the human genome sequence reveals a discrepancy between the number of protein-coding genes and the number of predicted proteins actually expressed by the genome. Proteomic analysis indicates that human cells are capable of synthesizing more than 100,000 different proteins and perhaps three times this number. What is the discrepancy, and how can it be reconciled?
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Textbook Question
In Section 21.10 we briefly discussed the Human Proteome Map (HPM). An interactive Web site for the HPM is available at http://www.humanproteomemap.org. Visit this site, and then answer the questions in parts (a) and (b) and complete part (c). How many fetal tissues were analyzed?
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Textbook Question
In Section 21.10 we briefly discussed the Human Proteome Map (HPM). An interactive Web site for the HPM is available at http://www.humanproteomemap.org. Visit this site, and then answer the questions in parts (a) and (b) and complete part (c). Use the 'Query' tab and select the 'Gene family' dropdown menu to do a search on the distribution of proteins encoded by a pathway of interest to you. Search in fetal tissues, adult tissues, or both.
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Textbook Question
Researchers have compared candidate loci in humans and rats in search of loci in the human genome that are likely to contribute to the constellation of factors leading to hypertension [Stoll, M., et al. (2000). Genome Res. 10:473–482]. Through this research, they identified 26 chromosomal regions that they consider likely to contain hypertension genes. How can comparative genomics aid in the identification of genes responsible for such a complex human disease? The researchers state that comparisons of rat and human candidate loci to those in the mouse may help validate their studies. Why might this be so?
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