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Ch. 21 - Genomic Analysis

Chapter 20, Problem 20

In Section 21.10 we briefly discussed the Human Proteome Map (HPM). An interactive Web site for the HPM is available at http://www.humanproteomemap.org. Visit this site, and then answer the questions in parts (a) and (b) and complete part (c). Use the 'Query' tab and select the 'Gene family' dropdown menu to do a search on the distribution of proteins encoded by a pathway of interest to you. Search in fetal tissues, adult tissues, or both.

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Welcome back. Let's look at our next question. What were the primary tools used in the human proteome app? To analyze human proteins. And when we look at our answer choices, we have choice A liquid chromatography, choice be mass spectrometry, Choice C, options A and B. Or choice D. None of the options is correct. Well to analyze human proteins that involved the need to look at a sample from a cell to separate the proteins in the cell from each other and then to analyze the identity of the cells in that sample of the proteins in the sample. Excuse me. So to do that, you do need two separate tools to separate the proteins. The project used liquid chromatography that involves that column of absorbent material. You run your sample through it. The proteins interact differently with the materials in the column, causing them to have different flow rates and that actually separates out um in a very sensitive way the different proteins in a single sample. So liquid chromatography is used for separation of the proteins from each other. Then you need a way to identify the identity or to analyze the identity of the proteins in the sample. So for that they use choice be mass spectrometry um which is away then. So you have the proteins separated, you can take each individual protein sample, run it through the mass spectrometry and that will help give a clue to the identity of the protein by its mass. So since both A and B are correct, our answer choice is going to be see here options A and B. And obviously Choice D. None of the options is correct. Is not our answer. So again, what were the primary tools used in the human proteome app to analyze human proteins? Choice C, options A and B. See you in the next video.
Related Practice
Textbook Question
Annotation of the human genome sequence reveals a discrepancy between the number of protein-coding genes and the number of predicted proteins actually expressed by the genome. Proteomic analysis indicates that human cells are capable of synthesizing more than 100,000 different proteins and perhaps three times this number. What is the discrepancy, and how can it be reconciled?
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Textbook Question
In Section 21.10 we briefly discussed the Human Proteome Map (HPM). An interactive Web site for the HPM is available at http://www.humanproteomemap.org. Visit this site, and then answer the questions in parts (a) and (b) and complete part (c). How many proteins were identified in this project?
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Textbook Question
In Section 21.10 we briefly discussed the Human Proteome Map (HPM). An interactive Web site for the HPM is available at http://www.humanproteomemap.org. Visit this site, and then answer the questions in parts (a) and (b) and complete part (c). How many fetal tissues were analyzed?
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Textbook Question
Researchers have compared candidate loci in humans and rats in search of loci in the human genome that are likely to contribute to the constellation of factors leading to hypertension [Stoll, M., et al. (2000). Genome Res. 10:473–482]. Through this research, they identified 26 chromosomal regions that they consider likely to contain hypertension genes. How can comparative genomics aid in the identification of genes responsible for such a complex human disease? The researchers state that comparisons of rat and human candidate loci to those in the mouse may help validate their studies. Why might this be so?
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Textbook Question
Homology can be defined as the presence of common structures because of shared ancestry. Homology can involve genes, proteins, or anatomical structures. As a result of 'descent with modification,' many homologous structures have adapted different purposes. List three anatomical structures in vertebrates that are homologous but have different functions.
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Textbook Question
Homology can be defined as the presence of common structures because of shared ancestry. Homology can involve genes, proteins, or anatomical structures. As a result of 'descent with modification,' many homologous structures have adapted different purposes. Is it likely that homologous proteins from different species have the same or similar functions? Explain.
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