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Ch. 15 - Gene Mutation, DNA Repair, and Transposition
Chapter 15, Problem 1

In this chapter, we focused on how gene mutations arise and how cells repair DNA damage. At the same time, we found opportunities to consider the methods and reasoning by which much of this information was acquired. From the explanations given in the chapter, How do we know that DNA repair mechanisms detect and correct the majority of spontaneous and induced mutations?

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1
Understand that DNA repair mechanisms are crucial for maintaining genetic stability by correcting errors that occur during DNA replication or due to environmental factors.
Recognize that experimental evidence supports the existence of DNA repair mechanisms. For example, studies using model organisms with defective repair genes show increased mutation rates, indicating the role of these genes in repair.
Consider the types of DNA repair mechanisms, such as mismatch repair, base excision repair, nucleotide excision repair, and double-strand break repair, each targeting specific types of DNA damage.
Examine how researchers use techniques like mutagenesis and genetic screens to identify and study genes involved in DNA repair pathways, providing insights into their function and efficiency.
Review the impact of DNA repair deficiencies in humans, such as in genetic disorders like xeroderma pigmentosum, which highlight the importance of these mechanisms in preventing mutations and maintaining genomic integrity.

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Key Concepts

Here are the essential concepts you must grasp in order to answer the question correctly.

DNA Repair Mechanisms

DNA repair mechanisms are cellular processes that identify and correct damage to the DNA molecules that encode an organism's genome. These mechanisms include various pathways such as base excision repair, nucleotide excision repair, and mismatch repair, which work to fix different types of DNA lesions. Understanding these processes is crucial for comprehending how cells maintain genetic integrity and prevent mutations.
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Spontaneous and Induced Mutations

Spontaneous mutations occur naturally during DNA replication or due to internal cellular processes, while induced mutations result from external factors such as radiation or chemical exposure. Both types of mutations can lead to changes in the genetic code, potentially affecting protein function and cellular behavior. Recognizing the sources and types of mutations helps in understanding the necessity and effectiveness of DNA repair mechanisms.
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Experimental Evidence for DNA Repair

Experimental evidence for the effectiveness of DNA repair mechanisms comes from various studies, including those using mutant strains of organisms that lack specific repair pathways. These studies often show increased mutation rates in these mutants compared to wild-type organisms, demonstrating the role of repair systems in correcting DNA damage. Additionally, techniques such as sequencing and molecular assays provide insights into the frequency and types of mutations that repair mechanisms can address.
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Related Practice
Textbook Question

In this chapter, we focused on how gene mutations arise and how cells repair DNA damage. At the same time, we found opportunities to consider the methods and reasoning by which much of this information was acquired. From the explanations given in the chapter,

How do we know that mutations occur randomly?

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Textbook Question
In this chapter, we focused on how gene mutations arise and how cells repair DNA damage. At the same time, we found opportunities to consider the methods and reasoning by which much of this information was acquired. From the explanations given in the chapter, How do we know that certain chemicals and wavelengths of radiation induce mutations in DNA?
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Textbook Question
Write a short essay contrasting how these concepts may differ between bacteria and eukaryotes.
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Textbook Question

Price et al. [(1999). J. Bacteriol. 181:2358–2362] conducted a genetic study of the toxin transport protein (PA) of Bacillus anthracis, the bacterium that causes anthrax in humans. Within the 2294-nucleotide gene in 26 strains they identified five point mutations—two missense and three synonyms—among different isolates. Necropsy samples from an anthrax outbreak in 1979 revealed a novel missense mutation and five unique nucleotide changes among ten victims. The authors concluded that these data indicate little or no horizontal transfer between different B. anthracis strains.

Which types of nucleotide changes (missense or synonyms) cause amino acid changes?

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Textbook Question

Price et al. [(1999). J. Bacteriol. 181:2358–2362] conducted a genetic study of the toxin transport protein (PA) of Bacillus anthracis, the bacterium that causes anthrax in humans. Within the 2294-nucleotide gene in 26 strains they identified five point mutations—two missense and three synonyms—among different isolates. Necropsy samples from an anthrax outbreak in 1979 revealed a novel missense mutation and five unique nucleotide changes among ten victims. The authors concluded that these data indicate little or no horizontal transfer between different B. anthracis strains.

On what basis did the authors conclude that evidence of horizontal transfer is absent from their data?

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