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Ch. 12 - DNA Organization in Chromosomes
Klug - Concepts of Genetics  12th Edition
Klug12th EditionConcepts of Genetics ISBN: 9780135564776Not the one you use?Change textbook
Chapter 12, Problem 2

Write a short essay that contrasts the major differences between the organization of DNA in viruses and bacteria versus eukaryotes.

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Begin by defining the basic structural organization of DNA in viruses and bacteria, noting that viral genomes can be either DNA or RNA, and when DNA, it is often circular or linear and relatively small in size, while bacterial DNA is typically a single circular chromosome located in the nucleoid region without a membrane-bound nucleus.
Explain that bacterial DNA is generally not associated with histone proteins but may have other DNA-binding proteins that help compact the DNA, whereas eukaryotic DNA is organized into multiple linear chromosomes tightly wrapped around histone proteins forming nucleosomes, which further fold into higher-order chromatin structures.
Discuss the presence or absence of membrane-bound organelles: bacteria and viruses lack a nucleus, so their DNA is free in the cytoplasm or capsid, while eukaryotic DNA is enclosed within a nuclear membrane, providing compartmentalization and regulation of gene expression.
Highlight the differences in genome size and complexity, with bacterial genomes being smaller and less complex, often containing operons for coordinated gene expression, whereas eukaryotic genomes are larger, contain introns and exons, and have complex regulatory sequences controlling gene expression.
Conclude by mentioning that viral DNA organization varies widely depending on the virus type, sometimes integrating into host genomes or existing as episomes, contrasting with the stable chromosomal organization seen in bacteria and the highly regulated chromatin structure in eukaryotes.

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Key Concepts

Here are the essential concepts you must grasp in order to answer the question correctly.

DNA Organization in Viruses and Bacteria

Viruses typically have compact genomes made of either DNA or RNA, often single or double-stranded, enclosed within a protein coat, lacking cellular structures. Bacterial DNA is usually a single circular chromosome located in the nucleoid region, with additional plasmids that carry extra genes, and it is not enclosed within a nucleus.
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Bacteria and Viral Chromosome Structure

DNA Organization in Eukaryotes

Eukaryotic DNA is organized into multiple linear chromosomes contained within a membrane-bound nucleus. DNA is wrapped around histone proteins forming nucleosomes, which further fold into chromatin, allowing complex regulation of gene expression and efficient packaging within the nucleus.
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Eukaryotic Transcription

Differences in Genome Complexity and Packaging

Eukaryotic genomes are generally larger and more complex, with extensive non-coding regions and regulatory sequences, while viral and bacterial genomes are smaller and more streamlined. Eukaryotes use chromatin remodeling and histone modifications for gene regulation, unlike viruses and bacteria, which rely on simpler mechanisms.
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Genomics Overview
Related Practice
Textbook Question

What is the experimental basis for concluding that puffs in polytene chromosomes and loops in lampbrush chromosomes are areas of intense transcription of RNA?

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Textbook Question

In the discussion, we focused on how DNA is organized at the chromosomal level. Along the way, we found many opportunities to consider the methods and reasoning by which much of this information was acquired. From the explanations given in the chapter, what answers would you propose to the following fundamental questions:

How did we learn that eukaryotic chromatin exists in the form of repeating nucleosomes, each consisting of about 200 base pairs and an octamer of histones?

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How do we know that satellite DNA consists of repetitive sequences and has been derived from regions of the centromere?

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Textbook Question

What genetic process is occurring in a puff of a polytene chromosome? How do we know this experimentally?

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