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Ch. 12 - DNA Organization in Chromosomes
Chapter 12, Problem 12

Mammals contain a diploid genome consisting of at least 10⁹ bp. If this amount of DNA is present as chromatin fibers, where each group of 200 bp of DNA is combined with 9 histones into a nucleosome and each group of 6 nucleosomes is combined into a solenoid, achieving a final packing ratio of 50, determine (a) the total number of nucleosomes in all fibers, (b) the total number of histone molecules combined with DNA in the diploid genome, and (c) the combined length of all fibers.

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insert step 1: Calculate the total number of nucleosomes by dividing the total base pairs (10^9 bp) by the number of base pairs per nucleosome (200 bp).
insert step 2: Calculate the total number of histone molecules by multiplying the total number of nucleosomes by the number of histones per nucleosome (9 histones).
insert step 3: Determine the packing ratio of the solenoid structure, which is given as 50.
insert step 4: Calculate the length of DNA before packing by dividing the total base pairs (10^9 bp) by the packing ratio (50).
insert step 5: Convert the length of DNA from base pairs to a physical length, considering the length of DNA per base pair (approximately 0.34 nm per bp).

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Key Concepts

Here are the essential concepts you must grasp in order to answer the question correctly.

Diploid Genome

A diploid genome contains two complete sets of chromosomes, one inherited from each parent, totaling approximately 10⁹ base pairs (bp) in mammals. This genetic material is organized into structures called chromatin, which condense to form chromosomes during cell division. Understanding the diploid nature is crucial for calculating the total number of nucleosomes and histones, as it affects the overall DNA content.
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Nucleosome Structure

Nucleosomes are the fundamental units of chromatin, consisting of a segment of DNA wrapped around a core of histone proteins. Each nucleosome typically contains about 200 bp of DNA and is formed by the association of DNA with nine histone proteins. This structure plays a key role in DNA packaging and regulation, making it essential for determining the total number of nucleosomes in the genome.
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Chromatin Packaging

Chromatin packaging refers to the hierarchical organization of DNA into higher-order structures, such as solenoids, which further compact the DNA for efficient storage within the nucleus. In this context, six nucleosomes combine to form a solenoid, achieving a significant packing ratio. Understanding this process is vital for calculating the combined length of all chromatin fibers and the overall organization of the genome.
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Related Practice
Textbook Question
Describe the molecular composition and arrangement of the components in the nucleosome.
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Textbook Question
Describe the transitions that occur as nucleosomes are coiled and folded, ultimately forming a chromatid.
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Textbook Question
Provide a comprehensive definition of heterochromatin and list as many examples as you can.
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Textbook Question
Assume that a viral DNA molecule is a 50-µm-long circular strand with a uniform 20-Å diameter. If this molecule is contained in a viral head that is a 0.08-µm-diameter sphere, will the DNA molecule fit into the viral head, assuming complete flexibility of the molecule? Justify your answer mathematically.
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Textbook Question
How many base pairs are in a molecule of phage T2 DNA 52-µm long?
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Textbook Question
Examples of histone modifications are acetylation (by histone acetyltransferase, or HAT), which is often linked to gene activation, and deacetylation (by histone deacetylases, or HDACs), which often leads to gene silencing typical of heterochromatin. Such heterochromatinization is initiated from a nucleation site and spreads bidirectionally until encountering boundaries that delimit the silenced areas. Recall from earlier in the text (see Chapter 4) the brief discussion of position effect, where repositioning of the w⁺ allele in Drosophila by translocation or inversion near heterochromatin produces intermittent w⁺ activity. In the heterozygous state (w⁺/w) a variegated eye is produced, with white and red patches. How might one explain position-effect variegation in terms of histone acetylation and/or deacetylation?
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