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Ch. 20 - Recombinant DNA Technology
Chapter 19, Problem 20

We usually think of enzymes as being most active at around 37°C, yet in PCR the DNA polymerase is subjected to multiple exposures of relatively high temperatures and seems to function appropriately at 65–75°C. What is special about the DNA polymerase typically used in PCR?

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1
Understand that PCR (Polymerase Chain Reaction) involves repeated cycles of heating and cooling to denature DNA, anneal primers, and extend the DNA strands.
Recognize that typical enzymes denature at high temperatures, losing their functional shape and activity.
Identify that the DNA polymerase used in PCR is derived from thermophilic bacteria, such as *Thermus aquaticus*, which naturally live in hot environments like hot springs.
Acknowledge that this DNA polymerase, known as Taq polymerase, is thermostable, meaning it can withstand the high temperatures used in PCR without denaturing.
Conclude that the thermostability of Taq polymerase allows it to remain active and functional during the high-temperature cycles of PCR, enabling efficient DNA replication.

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Key Concepts

Here are the essential concepts you must grasp in order to answer the question correctly.

Thermostability of DNA Polymerase

DNA polymerases used in PCR, such as Taq polymerase, are derived from thermophilic organisms, which thrive in high-temperature environments. This adaptation allows them to maintain their structural integrity and enzymatic activity at elevated temperatures, typically between 65–75°C, which is essential for the denaturation and annealing steps in PCR.
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Polymerase Chain Reaction (PCR)

PCR is a molecular biology technique used to amplify specific DNA sequences. It involves repeated cycles of denaturation, annealing, and extension, where the DNA polymerase synthesizes new DNA strands. The ability of the polymerase to withstand high temperatures is crucial for the efficiency and specificity of the amplification process.
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Enzyme Activity and Temperature

Enzymes generally exhibit optimal activity at specific temperatures, with most human enzymes functioning best around 37°C. However, the activity of enzymes can vary with temperature, as higher temperatures can increase reaction rates up to a point, beyond which denaturation occurs. Thermostable enzymes, like those used in PCR, are designed to remain active and stable at higher temperatures, allowing for effective DNA synthesis during the PCR process.
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Related Practice
Textbook Question

The National Institutes of Health created the Genetic Testing Registry (GTR) to increase transparency by publicly sharing information about the utility of their tests, research for the general public, patients, health-care workers, genetic counselors, insurance companies, and others. The Registry is intended to provide better information to patients, but companies involved in genetic testing are not required to participate. Should company participation be mandatory? Why or why not? Explain your answers.

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Textbook Question

In a typical PCR reaction, describe what is happening in stages occurring at temperature ranges (a) 92-26 °C, (b) 45-65 °C, and (c) 65-75 °C.

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Textbook Question

Should the FDA regulate direct-to-consumer genetic tests, or should these tests be available as a 'buyer beware' product?

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Textbook Question

Would you have your genome sequenced, if the price was affordable? Why or why not? If you answered yes, would you make your genome sequence publicly available? How might such information be misused?

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Textbook Question

Traditional Sanger sequencing has largely been replaced in recent years by next-generation and third-generation sequencing approaches. Describe advantages of these sequencing methods over first-generation Sanger sequencing.

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Textbook Question

Following the tragic shooting of 20 children at a school in Newtown, Connecticut, in 2012, Connecticut's state medical examiner requested a full genetic analysis of the killer's genome. What do you think investigators might be looking for? What might they expect to find? Might this analysis lead to oversimplified analysis of the cause of the tragedy?

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