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Ch. 20 - Recombinant DNA Technology
Chapter 19, Problem 22

How is fluorescent in situ hybridization (FISH) used to produce a spectral karyotype?

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span>Understand the basics of Fluorescent In Situ Hybridization (FISH): FISH is a molecular cytogenetic technique that uses fluorescent probes binding to specific parts of the chromosome to visualize and map the genetic material in an individual's cells.</span
span>Learn about spectral karyotyping: Spectral karyotyping (SKY) is a technique that allows for the visualization of all chromosomes in different colors using FISH. This is achieved by labeling each chromosome with a unique combination of fluorescent dyes.</span
span>Prepare the chromosome samples: Chromosomes are isolated from cells, typically during metaphase of cell division, when they are most condensed and visible under a microscope.</span
span>Design and apply the probes: Specific DNA probes are labeled with different combinations of fluorescent dyes. Each probe is complementary to sequences on a particular chromosome, allowing it to hybridize, or bind, to its target chromosome.</span
span>Visualize and analyze the results: After hybridization, the chromosomes are viewed under a fluorescence microscope equipped with a spectral imaging system. The system captures the emitted fluorescence from each chromosome, assigning a unique color to each, thus creating a spectral karyotype.</span

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Key Concepts

Here are the essential concepts you must grasp in order to answer the question correctly.

Fluorescent In Situ Hybridization (FISH)

FISH is a molecular cytogenetic technique that uses fluorescent probes to bind to specific DNA sequences on chromosomes. This allows for the visualization of genetic material in cells, enabling researchers to identify chromosomal abnormalities, gene mapping, and the localization of specific genes within the genome.
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Spectral Karyotyping

Spectral karyotyping is an advanced imaging technique that allows for the simultaneous visualization of all chromosomes in a cell using different fluorescent colors. By applying FISH with multiple probes, each labeled with distinct fluorescent dyes, researchers can create a comprehensive karyotype that reveals chromosomal structure and any abnormalities present.
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Chromosomal Abnormalities

Chromosomal abnormalities refer to changes in the structure or number of chromosomes, which can lead to genetic disorders or diseases. FISH and spectral karyotyping are crucial for detecting these abnormalities, such as deletions, duplications, or translocations, providing valuable information for diagnosis and treatment in clinical genetics.
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Related Practice
Textbook Question

Would you have your genome sequenced, if the price was affordable? Why or why not? If you answered yes, would you make your genome sequence publicly available? How might such information be misused?

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Textbook Question

Traditional Sanger sequencing has largely been replaced in recent years by next-generation and third-generation sequencing approaches. Describe advantages of these sequencing methods over first-generation Sanger sequencing.

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Textbook Question

Following the tragic shooting of 20 children at a school in Newtown, Connecticut, in 2012, Connecticut's state medical examiner requested a full genetic analysis of the killer's genome. What do you think investigators might be looking for? What might they expect to find? Might this analysis lead to oversimplified analysis of the cause of the tragedy?

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Textbook Question

Private companies are offering personal DNA sequencing along with interpretation. What services do they offer? Do you think that these services should be regulated, and if so, in what way? Investigate one such company, 23andMe, at http://www.23andMe.com, before answering these questions.

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Textbook Question
Microsatellites are currently exploited as markers for paternity testing. A sample paternity test is shown in the following table in which ten microsatellite markers were used to test samples from a mother, her child, and an alleged father. The name of the microsatellite locus is given in the left-hand column, and the genotype of each individual is recorded as the number of repeats he or she carries at that locus. For example, at locus D9S302, the mother carries 30 repeats on one of her chromosomes and 31 on the other. In cases where an individual carries the same number of repeats on both chromosomes, only a single number is recorded. (Some of the numbers are followed by a decimal point, for example, 20.2, to indicate a partial repeat in addition to the complete repeats.) Assuming that these markers are inherited in a simple Mendelian fashion, can the alleged father be excluded as the source of the sperm that produced the child? Why or why not? Explain.
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Textbook Question

As you will learn later in the text (Special Topics Chapter 1— CRISPR-Cas and Genome Editing), the CRISPR-Cas system has great potential but also raises many ethical issues about its potential applications because theoretically it can be used to edit any gene in the genome. What do you think are some of the concerns about the use of CRISPR-Cas on humans? Should CRISPR-Cas applications be limited for use on only certain human genes but not others? Explain your answers.

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