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Ch. 16 - Regulation of Gene Expression in Bacteria
Chapter 16, Problem 15

The creation of milk products such as cheeses and yogurts is dependent on the conversion by various anaerobic bacteria, including several Lactobacillus species, of lactose to glucose and galactose, ultimately producing lactic acid. These conversions are dependent on both permease and β-galactosidase as part of the lac operon. After selection for rapid fermentation for the production of yogurt, one Lactobacillus subspecies lost its ability to regulate lac operon expression [Lapierre, L., et al. (2002). J. Bacteriol. 184:928–935]. Would you consider it likely that in this subspecies the lac operon is on or off? What genetic events would likely contribute to the loss of regulation as described above?

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Understand the role of the lac operon: The lac operon is a set of genes responsible for the metabolism of lactose in bacteria. It includes genes for permease and β-galactosidase, which are crucial for lactose uptake and conversion.
Consider the regulation mechanism: Normally, the lac operon is regulated by the presence or absence of lactose. In the absence of lactose, a repressor binds to the operator region, preventing transcription. When lactose is present, it binds to the repressor, causing it to release from the operator, allowing transcription.
Analyze the scenario: The problem states that the Lactobacillus subspecies lost its ability to regulate lac operon expression. This suggests that the operon might be constitutively expressed, meaning it is always on, regardless of lactose presence.
Identify potential genetic events: Loss of regulation could be due to mutations in the repressor gene (lacI), preventing it from binding to the operator, or mutations in the operator sequence itself, preventing repressor binding. Another possibility is a mutation in the promoter region, leading to constant transcription.
Consider the implications: If the lac operon is always on, the bacteria can continuously metabolize lactose, which might be advantageous in environments where lactose is consistently available, such as in yogurt production.

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Key Concepts

Here are the essential concepts you must grasp in order to answer the question correctly.

Lac Operon

The lac operon is a set of genes in bacteria that are involved in the metabolism of lactose. It includes genes for β-galactosidase, which breaks down lactose into glucose and galactose, and permease, which facilitates lactose entry into the cell. The operon is regulated by the presence or absence of lactose, allowing bacteria to efficiently use lactose as an energy source when available.
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Lac Operon Overview

Gene Regulation

Gene regulation refers to the mechanisms that control the expression of genes, determining when and how much of a gene product is made. In the context of the lac operon, regulation is achieved through the binding of repressor proteins and the presence of inducers like lactose, which can activate or deactivate the operon. Loss of regulation can lead to continuous expression of the operon, regardless of lactose availability.
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Mutations and Genetic Events

Mutations are changes in the DNA sequence that can affect gene function and regulation. In the case of the Lactobacillus subspecies, genetic events such as point mutations, deletions, or insertions in the regulatory regions of the lac operon could lead to a loss of regulation. These mutations may result in the operon being constitutively active (always 'on') or inactive, impacting the organism's ability to metabolize lactose effectively.
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Related Practice
Textbook Question
Describe the role of attenuation in the regulation of tryptophan biosynthesis.
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Textbook Question
Attenuation of the trp operon was viewed as a relatively inefficient way to achieve genetic regulation when it was first discovered in the 1970s. Since then, however, attenuation has been found to be a relatively common regulatory strategy. Assuming that attenuation is a relatively inefficient way to achieve genetic regulation, what might explain its widespread occurrence?
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Textbook Question
Neelaredoxin is a 15-kDa protein that is a gene product common in anaerobic bacteria. It has superoxide-scavenging activity, and it is constitutively expressed. In addition, its expression is not further induced during its exposure to O₂ or H₂O₂ [Silva, G. et al. (2001). J. Bacteriol. 183:4413–4420]. What do the terms constitutively expressed and induced mean in terms of neelaredoxin synthesis?
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Textbook Question
Both attenuation of the trp operon in E. coli and riboswitches in B. subtilis rely on changes in the secondary structure of the leader regions of mRNA to regulate gene expression. Compare and contrast the specific mechanisms in these two types of regulation with that involving short noncoding RNAs (sRNAs).
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Textbook Question
Keeping in mind the life cycle of bacteriophages discussed earlier in the text (see Chapter 6), consider the following problem: During the reproductive cycle of a temperate bacteriophage, the viral DNA inserts into the bacterial chromosome where the resultant prophage behaves much like a Trojan horse. It can remain quiescent, or it can become lytic and initiate a burst of progeny viruses. Several operons maintain the prophage state by interacting with a repressor that keeps the lytic cycle in check. Insults (ultraviolet light, for example) to the bacterial cell lead to a partial breakdown of the repressor, which in turn causes the production of enzymes involved in the lytic cycle. As stated in this simple form, would you consider this system of regulation to be operating under positive or negative control?
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Textbook Question
Bacterial strategies to evade natural or human-imposed antibiotics are varied and include membrane-bound efflux pumps that export antibiotics from the cell. A review of efflux pumps [Grkovic, S., et al. (2002)] states that, because energy is required to drive the pumps, activating them in the absence of the antibiotic has a selective disadvantage. The review also states that a given antibiotic may play a role in the regulation of efflux by interacting with either an activator protein or a repressor protein, depending on the system involved. How might such systems be categorized in terms of negative control (inducible or repressible) or positive control (inducible or repressible)?
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