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Ch. 13 - The Genetic Code and Transcription
Klug - Concepts of Genetics  12th Edition
Klug12th EditionConcepts of Genetics ISBN: 9780135564776Not the one you use?Change textbook
Chapter 13, Problem 13b

A short RNA molecule was isolated that demonstrated a hyperchromic shift, indicating secondary structure. Its sequence was determined to be
5'-AGGCGCCGACUCUACU-3'
What DNA sequence would give rise to this RNA molecule through transcription?

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1
Identify that the RNA sequence is synthesized from the DNA template strand during transcription, where RNA is complementary and antiparallel to the DNA template strand.
Write down the RNA sequence given: 5'-AGGCGCCGACUCUACU-3'. Since RNA is synthesized 5' to 3', the DNA template strand must be complementary and oriented 3' to 5'.
Find the complementary DNA template strand by replacing each RNA base with its DNA complement: A pairs with T, G pairs with C, C pairs with G, and U (uracil) pairs with A. Remember to reverse the direction to 3' to 5'.
Once the DNA template strand is determined (3' to 5'), write the corresponding DNA coding strand, which has the same sequence as the RNA (except T replaces U) and runs 5' to 3'.
Present the final DNA sequence (coding strand) that would give rise to the RNA molecule during transcription.

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Key Concepts

Here are the essential concepts you must grasp in order to answer the question correctly.

Transcription Process

Transcription is the process by which an RNA molecule is synthesized from a DNA template strand. RNA polymerase reads the DNA template strand in the 3' to 5' direction, producing a complementary RNA strand in the 5' to 3' direction. The RNA sequence is complementary to the DNA template strand and identical (except for uracil replacing thymine) to the DNA coding strand.
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DNA and RNA Base Pairing Rules

Base pairing rules dictate that adenine (A) pairs with thymine (T) in DNA, but in RNA, adenine pairs with uracil (U). Cytosine (C) pairs with guanine (G) in both DNA and RNA. During transcription, RNA bases pair complementarily with the DNA template strand, replacing thymine with uracil in RNA.
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DNA Coding and Template Strands

The DNA coding strand has the same sequence as the RNA transcript (except T is replaced by U in RNA), while the template strand is complementary to both. To find the DNA sequence that produces a given RNA, one must identify the coding strand sequence, which matches the RNA sequence with T substituted for U.
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Related Practice
Textbook Question

Refer to Table 13.1. Can you hypothesize why a synthetic RNA composed of a mixture of poly U poly A would not stimulate incorporation of ¹⁴C-phenylalanine into protein?

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Textbook Question

Predict the amino acid sequence produced during translation by the following short hypothetical mRNA sequences (note that the second sequence was formed from the first by a deletion of only one nucleotide):

Sequence 1: 5'-AUGCCGGAUUAUAGUUGA-3'

Sequence 2: 5'-AUGCCGGAUUAAGUUGA-3'

What type of mutation gave rise to sequence 2?

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Textbook Question

A short RNA molecule was isolated that demonstrated a hyperchromic shift, indicating secondary structure. Its sequence was determined to be

5'-AGGCGCCGACUCUACU-3'

Propose a two-dimensional model for this molecule.

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Textbook Question

A short RNA molecule was isolated that demonstrated a hyperchromic shift, indicating secondary structure. Its sequence was determined to be

5'-AGGCGCCGACUCUACU-3'

If the molecule were a tRNA fragment containing a CGA anticodon, what would the corresponding codon be?

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Textbook Question

A short RNA molecule was isolated that demonstrated a hyperchromic shift, indicating secondary structure. Its sequence was determined to be

   5'-AGGCGCCGACUCUACU-3'

If the molecule were an internal part of a message, what amino acid sequence would result from it following translation?

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Textbook Question

A glycine residue is in position 210 of the tryptophan synthetase enzyme of wild-type E. coli. If the codon specifying glycine is GGA, how many single-base substitutions will result in an amino acid substitution at position 210? What are they? How many will result if the wild-type codon is GGU?

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