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Ch. 12 - DNA Organization in Chromosomes
Chapter 12, Problem 20

In a study of Drosophila, two normally active genes, w⁺ (wild-type allele of the white-eye gene) and hsp26 (a heat-shock gene), were introduced (using a plasmid vector) into euchromatic and heterochromatic chromosomal regions, and the relative activity of each gene was assessed [Sun et al. (2002)]. An approximation of the resulting data is shown in the following table. Which characteristic or characteristics of heterochromatin are supported by the experimental data? Gene Activity (relative percentage) _ Euchromatin Heterochromatin hsp26 100% 31% w⁺ 100% 8%

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Identify the key difference between euchromatin and heterochromatin: Euchromatin is generally more transcriptionally active, while heterochromatin is more condensed and less transcriptionally active.
Examine the gene activity data for both euchromatin and heterochromatin: hsp26 shows 100% activity in euchromatin and 31% in heterochromatin, while w⁺ shows 100% activity in euchromatin and 8% in heterochromatin.
Compare the relative gene activity in euchromatin versus heterochromatin: Both genes show reduced activity in heterochromatin compared to euchromatin.
Consider the implications of reduced gene activity in heterochromatin: This suggests that heterochromatin is less accessible for transcription, supporting its role in gene silencing or reduced gene expression.
Conclude which characteristics of heterochromatin are supported: The data supports that heterochromatin is associated with reduced gene expression and transcriptional silencing.

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Key Concepts

Here are the essential concepts you must grasp in order to answer the question correctly.

Euchromatin vs. Heterochromatin

Euchromatin and heterochromatin are two forms of chromatin found in eukaryotic cells. Euchromatin is less condensed, transcriptionally active, and accessible for gene expression, while heterochromatin is more tightly packed, transcriptionally inactive, and often associated with gene silencing. Understanding these differences is crucial for interpreting gene activity data in the context of chromosomal regions.
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Gene Expression Regulation

Gene expression regulation refers to the mechanisms that control the transcription and translation of genes, influencing how much of a gene product is produced. Factors such as chromatin structure, transcription factors, and epigenetic modifications play significant roles in determining whether genes are active or silenced. The experimental data highlights how the chromatin environment affects the expression levels of the introduced genes.
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Heat-Shock Response

The heat-shock response is a cellular mechanism activated by stress conditions, such as elevated temperatures, leading to the expression of heat-shock proteins like hsp26. These proteins help protect and refold damaged proteins, ensuring cell survival. The reduced activity of hsp26 in heterochromatin suggests that the chromatin state can influence the cell's ability to respond to stress, which is a key characteristic of heterochromatin.
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History and Experiments
Related Practice
Textbook Question
Assume that a viral DNA molecule is a 50-µm-long circular strand with a uniform 20-Å diameter. If this molecule is contained in a viral head that is a 0.08-µm-diameter sphere, will the DNA molecule fit into the viral head, assuming complete flexibility of the molecule? Justify your answer mathematically.
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Textbook Question
How many base pairs are in a molecule of phage T2 DNA 52-µm long?
448
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Textbook Question
Examples of histone modifications are acetylation (by histone acetyltransferase, or HAT), which is often linked to gene activation, and deacetylation (by histone deacetylases, or HDACs), which often leads to gene silencing typical of heterochromatin. Such heterochromatinization is initiated from a nucleation site and spreads bidirectionally until encountering boundaries that delimit the silenced areas. Recall from earlier in the text (see Chapter 4) the brief discussion of position effect, where repositioning of the w⁺ allele in Drosophila by translocation or inversion near heterochromatin produces intermittent w⁺ activity. In the heterozygous state (w⁺/w) a variegated eye is produced, with white and red patches. How might one explain position-effect variegation in terms of histone acetylation and/or deacetylation?
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Textbook Question
While much remains to be learned about the role of nucleosomes and chromatin structure and function, recent research indicates that in vivo chemical modification of histones is associated with changes in gene activity. One study determined that acetylation of H3 and H4 is associated with 21.1 percent and 13.8 percent increases in yeast gene activity, respectively, and that histones associated with yeast heterochromatin are hypomethylated relative to the genome average [Bernstein et al. (2000)]. Speculate on the significance of these findings in terms of nucleosome–DNA interactions and gene activity.
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Textbook Question
An article entitled 'Nucleosome Positioning at the Replication Fork' states: 'both the 'old' randomly segregated nucleosomes as well as the 'new' assembled histone octamers rapidly position themselves (within seconds) on the newly replicated DNA strands' [Lucchini et al. (2002)]. Given this statement, how would one compare the distribution of nucleosomes and DNA in newly replicated chromatin? How could one experimentally test the distribution of nucleosomes on newly replicated chromosomes?
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Textbook Question
Following is a diagram of the general structure of the bacteriophage chromosome. Speculate on the mechanism by which it forms a closed ring upon infection of the host cell.
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