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Ch. 3 - Observing Microorganisms Through a Microscope
Chapter 3, Problem 3.7a

Assume you stain Clostridium by applying a basic stain, carbolfuchsin, with heat, decolorizing with acid-alcohol, and counterstaining with an acidic stain, nigrosin. Through the microscope, the endospores are 1, and the cells are stained 2.
a. 1—red; 2—black
b. 1—black; 2—colorless
c. 1—colorless; 2—black
d. 1—red; 2—colorless
e. 1—black; 2—red

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1
Identify the staining method: The problem describes a staining process similar to the acid-fast stain, where carbolfuchsin is used as a primary stain with heat, followed by decolorization with acid-alcohol, and counterstaining with nigrosin.
Understand the role of each stain: Carbolfuchsin is a basic stain that penetrates the cell wall and stains the cells red. Nigrosin is an acidic stain that provides a dark background, typically used in negative staining.
Consider the effect of decolorization: Acid-alcohol is used to decolorize non-acid-fast cells, which would remove the carbolfuchsin from cells that do not retain the stain.
Determine the appearance of endospores: Endospores are resistant to staining and typically appear colorless after the decolorization step, as they do not retain the carbolfuchsin.
Analyze the final appearance: After counterstaining with nigrosin, the cells that retained carbolfuchsin will appear red, while the endospores will remain colorless against a dark background.

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Key Concepts

Here are the essential concepts you must grasp in order to answer the question correctly.

Endospore Staining

Endospore staining is a differential staining technique used to visualize bacterial endospores, which are resistant structures formed by some bacteria to survive harsh conditions. The primary stain, carbolfuchsin, penetrates the endospores when heat is applied, making them appear red. After decolorization with acid-alcohol, the endospores retain the red color, while vegetative cells may lose the primary stain.
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Counterstaining

Counterstaining is a technique used in microscopy to provide contrast to the primary stain, allowing for better visualization of different cell structures. In this case, nigrosin, an acidic stain, is used to stain the vegetative cells after the decolorization step. This results in the vegetative cells appearing black against a red background of the endospores, enhancing the differentiation between the two.
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Acid-Alcohol Decolorization

Acid-alcohol decolorization is a critical step in the staining process that removes the primary stain from certain cells while retaining it in others, particularly endospores. This step exploits the differences in cell wall composition, where the more resistant endospores retain the carbolfuchsin stain, while the vegetative cells lose it. Understanding this process is essential for interpreting the results of the staining procedure.
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