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Ch. 17+18 - Transcriptional Regulation in Eukaryotes
Chapter 17, Problem 25

Regulation of the lac operon in E. coli (see Chapter 16) and regulation of the GAL system in yeast are analogous in that they both serve to adapt cells to growth on different carbon sources. However, the transcriptional changes are accomplished very differently. Consider the conceptual similarities and differences as you address the following.

Compare and contrast the roles of the lac operon inducer in bacteria and Gal3p in eukaryotes in the regulation of their respective systems.

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span>Identify the role of the lac operon inducer in E. coli. The lac operon is regulated by the presence or absence of lactose, which acts as an inducer. When lactose is present, it binds to the repressor protein, causing a conformational change that prevents the repressor from binding to the operator region, thus allowing transcription of the operon.</span
span>Understand the role of Gal3p in the GAL system in yeast. Gal3p is a protein that, in the presence of galactose, interacts with Gal80p, relieving its inhibition on Gal4p, a transcriptional activator. This interaction allows Gal4p to activate transcription of the GAL genes.</span
span>Compare the mechanisms: Both systems involve an inducer molecule (lactose in bacteria, galactose in yeast) that interacts with a regulatory protein (repressor in bacteria, Gal3p in yeast) to relieve repression and allow transcription.</span
span>Contrast the systems: In the lac operon, the inducer directly interacts with the repressor to prevent it from binding to DNA. In the GAL system, Gal3p does not bind directly to DNA but instead interacts with another protein (Gal80p) to relieve repression on a transcriptional activator (Gal4p).</span
span>Consider the cellular context: The lac operon is a prokaryotic system, which typically involves simpler regulatory mechanisms, while the GAL system is eukaryotic, involving more complex protein-protein interactions and regulatory layers.</span

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Key Concepts

Here are the essential concepts you must grasp in order to answer the question correctly.

Lac Operon

The lac operon is a set of genes in E. coli that are involved in the metabolism of lactose. It is regulated by the presence or absence of lactose, which acts as an inducer. When lactose is present, it binds to the repressor protein, allowing transcription of the genes necessary for lactose utilization. This system exemplifies prokaryotic gene regulation, where the operon structure allows for coordinated control of multiple genes.
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Lac Operon Overview

Gal3p Protein

Gal3p is a regulatory protein in yeast that plays a crucial role in the GAL gene system, which is responsible for the metabolism of galactose. Unlike the lac operon, Gal3p functions as a sensor for galactose, binding to it and activating transcription of the GAL genes. This mechanism highlights the differences in eukaryotic regulation, where proteins like Gal3p integrate signals to modulate gene expression in response to environmental changes.
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Transcriptional Regulation

Transcriptional regulation refers to the mechanisms that control the transcription of genes, determining when and how much of a gene product is made. In both the lac operon and the GAL system, transcriptional regulation is essential for adapting to different carbon sources. However, the processes differ significantly; the lac operon relies on a simple repressor-inducer interaction, while the GAL system involves more complex interactions between multiple proteins and regulatory elements, reflecting the intricacies of eukaryotic gene regulation.
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Eukaryotic Transcription
Related Practice
Textbook Question

Much of what we know about gene interactions in development has been learned using nematodes, yeast, flies, and bacteria. This is due, in part, to the relative ease of genetic manipulation of these well-characterized genomes. However, of great interest are gene interactions involving complex diseases in humans. Wang and White [(2011). Nature Methods 8(4):341–346] describe work using RNAi to examine the interactive proteome in mammalian cells. They mention that knockdown inefficiencies and off-target effects of introduced RNAi species are areas that need particular improvement if the methodology is to be fruitful.

How might one use RNAi to study developmental pathways?

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Textbook Question

Much of what we know about gene interactions in development has been learned using nematodes, yeast, flies, and bacteria. This is due, in part, to the relative ease of genetic manipulation of these well-characterized genomes. However, of great interest are gene interactions involving complex diseases in humans. Wang and White [(2011). Nature Methods 8(4):341–346] describe work using RNAi to examine the interactive proteome in mammalian cells. They mention that knockdown inefficiencies and off-target effects of introduced RNAi species are areas that need particular improvement if the methodology is to be fruitful.

Comment on how 'knockdown inefficiencies' and 'off-target effects' would influence the interpretation of results.

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Textbook Question

In this chapter, we discussed several specific cis-elements in mRNAs that regulate splicing, stability, decay, localization, and translation. However, it is likely that many other uncharacterized cis-elements exist. One way in which they may be characterized is through the use of a reporter gene such as the gene encoding the green fluorescent protein (GFP) from jellyfish. GFP emits green fluorescence when excited by blue light. Explain how one might be able to devise an assay to test for the effect of various cis-elements on posttranscriptional gene regulation using cells that transcribe a GFP mRNA with genetically inserted cis-elements.

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Textbook Question

Regulation of the lac operon in E. coli (see Chapter 16) and regulation of the GAL system in yeast are analogous in that they both serve to adapt cells to growth on different carbon sources. However, the transcriptional changes are accomplished very differently. Consider the conceptual similarities and differences as you address the following.

Compare and contrast the cis-regulatory elements of the lac operon and GAL gene system.

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Textbook Question

Regulation of the lac operon in E. coli (see Chapter 16) and regulation of the GAL system in yeast are analogous in that they both serve to adapt cells to growth on different carbon sources. However, the transcriptional changes are accomplished very differently. Consider the conceptual similarities and differences as you address the following.

Compare and contrast how these two systems are negatively regulated such that they are downregulated in the presence of glucose.

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Textbook Question

Incorrectly spliced RNAs often lead to human pathologies. Scientists have examined cancer cells for splice-specific changes and found that many of the changes disrupt tumor-suppressor gene function [Xu and Lee (2003). Nucl. Acids Res. 31:5635–5643]. In general, what would be the effects of splicing changes on these RNAs and the function of tumor-suppressor gene function? How might loss of splicing specificity be associated with cancer?

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