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Ch. 15 - Gene Mutation, DNA Repair, and Transposition
Chapter 15, Problem 31

Mutations in the IL2RG gene cause approximately 30 percent of severe combined immunodeficiency disorder (SCID) cases in humans. These mutations result in alterations to a protein component of cytokine receptors that are essential for proper development of the immune system. The IL2RG gene is composed of eight exons and contains upstream and downstream sequences that are necessary for proper transcription and translation. Below are some of the mutations observed. For each, explain its likely influence on the IL2RG gene product (assume its length to be 375 amino acids).

Deletion in Exon 2, causing frameshift

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1
Identify the location of the mutation: The mutation is a deletion in Exon 2 of the IL2RG gene.
Understand the type of mutation: A frameshift mutation occurs when nucleotides are inserted or deleted from the DNA sequence, altering the reading frame of the gene.
Consider the impact of a frameshift: Since the reading frame is shifted, all downstream amino acids will be altered, potentially leading to a premature stop codon.
Predict the effect on the protein: The frameshift likely results in a truncated protein that is shorter than the normal 375 amino acids, potentially losing essential functional domains.
Assess the functional consequences: The truncated protein may be nonfunctional or have reduced function, impairing the cytokine receptor's role in immune system development, contributing to SCID.

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Key Concepts

Here are the essential concepts you must grasp in order to answer the question correctly.

Gene Structure and Function

Genes are segments of DNA that encode instructions for synthesizing proteins. The IL2RG gene, for instance, consists of eight exons, which are the coding regions that determine the amino acid sequence of the protein. Understanding the structure of genes, including exons and regulatory sequences, is crucial for comprehending how mutations can affect protein function and lead to disorders like SCID.
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Mutations and Their Effects

Mutations are changes in the DNA sequence that can alter gene function. A deletion in Exon 2 of the IL2RG gene, for example, can cause a frameshift mutation, which shifts the reading frame of the genetic code. This often results in a completely different and nonfunctional protein, highlighting how specific mutations can lead to severe consequences in protein synthesis and function.
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Cytokine Receptors and Immune Function

Cytokine receptors are proteins on the surface of cells that bind to cytokines, signaling molecules that regulate immune responses. The IL2RG gene product is a component of these receptors, essential for the development and function of immune cells. Mutations affecting this gene can disrupt cytokine signaling, leading to impaired immune responses and conditions like severe combined immunodeficiency (SCID).
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Textbook Question

Mutations in the IL2RG gene cause approximately 30 percent of severe combined immunodeficiency disorder (SCID) cases in humans. These mutations result in alterations to a protein component of cytokine receptors that are essential for proper development of the immune system. The IL2RG gene is composed of eight exons and contains upstream and downstream sequences that are necessary for proper transcription and translation. Below are some of the mutations observed. For each, explain its likely influence on the IL2RG gene product (assume its length to be 375 amino acids).

Insertion in Exon 1, causing frameshift

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Textbook Question

Mutations in the IL2RG gene cause approximately 30 percent of severe combined immunodeficiency disorder (SCID) cases in humans. These mutations result in alterations to a protein component of cytokine receptors that are essential for proper development of the immune system. The IL2RG gene is composed of eight exons and contains upstream and downstream sequences that are necessary for proper transcription and translation. Below are some of the mutations observed. For each, explain its likely influence on the IL2RG gene product (assume its length to be 375 amino acids).

Insertion in Exon 7, causing frameshift

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Textbook Question

Mutations in the IL2RG gene cause approximately 30 percent of severe combined immunodeficiency disorder (SCID) cases in humans. These mutations result in alterations to a protein component of cytokine receptors that are essential for proper development of the immune system. The IL2RG gene is composed of eight exons and contains upstream and downstream sequences that are necessary for proper transcription and translation. Below are some of the mutations observed. For each, explain its likely influence on the IL2RG gene product (assume its length to be 375 amino acids).

Missense mutation

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Textbook Question

Mutations in the IL2RG gene cause approximately 30 percent of severe combined immunodeficiency disorder (SCID) cases in humans. These mutations result in alterations to a protein component of cytokine receptors that are essential for proper development of the immune system. The IL2RG gene is composed of eight exons and contains upstream and downstream sequences that are necessary for proper transcription and translation. Below are some of the mutations observed. For each, explain its likely influence on the IL2RG gene product (assume its length to be 375 amino acids).

Deletion in Exon 2, in frame

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Textbook Question

Mutations in the IL2RG gene cause approximately 30 percent of severe combined immunodeficiency disorder (SCID) cases in humans. These mutations result in alterations to a protein component of cytokine receptors that are essential for proper development of the immune system. The IL2RG gene is composed of eight exons and contains upstream and downstream sequences that are necessary for proper transcription and translation. Below are some of the mutations observed. For each, explain its likely influence on the IL2RG gene product (assume its length to be 375 amino acids).

Large deletion covering Exons 2 and 3

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Textbook Question
When a double-strand DNA break occurs in a eukaryotic cell, it may be repaired by either nonhomologous end joining or homologous recombination. How do these different repair mechanisms lead to potentially different outcomes?
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