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Ch. 13 - The Genetic Code and Transcription
Chapter 13, Problem 33

Isoginkgetin is a cell-permeable chemical isolated from the Ginkgo biloba tree that binds to and inhibits snRNPs.

What types of problems would you anticipate in cells treated with isoginkgetin?

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span>Understand the role of snRNPs: Small nuclear ribonucleoproteins (snRNPs) are essential components of the spliceosome, which is responsible for the splicing of pre-mRNA in eukaryotic cells.</span
span>Recognize the impact of inhibiting snRNPs: Inhibition of snRNPs by isoginkgetin would likely disrupt the normal splicing process, leading to the accumulation of unspliced pre-mRNA.</span
span>Consider the consequences of unspliced pre-mRNA: Accumulation of unspliced pre-mRNA can result in the production of non-functional or deleterious proteins, as the mRNA may not be properly processed into mature mRNA.</span
span>Identify potential cellular problems: Cells may experience issues such as impaired protein synthesis, disrupted cellular functions, and possibly cell death due to the lack of essential proteins.</span
span>Explore broader implications: On a larger scale, tissues and organs could be affected, leading to physiological dysfunctions depending on the extent and duration of isoginkgetin exposure.</span

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Key Concepts

Here are the essential concepts you must grasp in order to answer the question correctly.

snRNPs (small nuclear ribonucleoproteins)

snRNPs are essential components of the spliceosome, a complex responsible for the splicing of pre-mRNA in eukaryotic cells. They play a critical role in removing introns from pre-mRNA and joining exons together, which is vital for producing mature mRNA that can be translated into proteins. Inhibition of snRNPs can lead to improper splicing, resulting in dysfunctional proteins and potentially causing cellular stress or apoptosis.
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mRNA splicing

mRNA splicing is the process by which introns are removed and exons are joined together in pre-mRNA to form mature mRNA. This process is crucial for gene expression, as it determines which protein isoforms are produced. Disruption of splicing due to the inhibition of snRNPs by isoginkgetin could lead to the production of non-functional proteins or the retention of introns, which can severely affect cellular function and viability.
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cellular stress response

The cellular stress response is a set of mechanisms that cells activate in response to various stressors, including chemical inhibitors like isoginkgetin. When splicing is disrupted, cells may experience an accumulation of unspliced pre-mRNA, leading to stress responses such as the activation of the unfolded protein response (UPR) or apoptosis. Understanding this response is crucial for predicting the potential consequences of treating cells with isoginkgetin.
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Related Practice
Textbook Question

RNAi is currently being tested as a therapeutic tool for genetic diseases and other conditions. Consider the following: cystic fibrosis caused by loss of function of the CFTR gene, HIV infection, and cancer caused by hyperactivity of a growth factor receptor. Which of these may be treatable by RNAi, and which not? Explain your reasoning.

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Textbook Question

Explain how the expression of a single gene can be quickly, efficiently, and specifically shut down at the transcriptional, posttranscriptional, and posttranslational stages through the coordinated expression of a transcriptional repressor, an miRNA, and a ubiquitin ligase.

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Textbook Question

Recent observations indicate that alternative splicing is a common way for eukaryotes to expand their repertoire of gene functions. Studies indicate that approximately 50 percent of human genes exhibit alternative splicing and approximately 15 percent of disease-causing mutations involve aberrant alternative splicing. Different tissues show remarkably different frequencies of alternative splicing, with the brain accounting for approximately 18 percent of such events [Xu et al. (2002). Nucl. Acids Res. 30:3754–3766].

Why might some tissues engage in more alternative splicing than others?

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Textbook Question

Isoginkgetin is a cell-permeable chemical isolated from the Ginkgo biloba tree that binds to and inhibits snRNPs. Would this be most problematic for E. coli cells, yeast cells, or human cells? Why?

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