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Ch. 11 - DNA Replication and Recombination
Chapter 11, Problem 16

Define and indicate the significance of (a) Okazaki fragments, (b) DNA ligase, and (c) primer RNA during DNA replication.

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Okazaki fragments are short sequences of DNA nucleotides which are synthesized discontinuously and later linked together by the enzyme DNA ligase to create the lagging strand during DNA replication.
The significance of Okazaki fragments lies in their role in allowing the replication of the lagging strand, which is synthesized in a direction opposite to the replication fork movement.
DNA ligase is an enzyme that facilitates the joining of DNA strands together by catalyzing the formation of a phosphodiester bond, crucial for sealing nicks in the sugar-phosphate backbone of the DNA.
The significance of DNA ligase is that it ensures the continuity and integrity of the DNA molecule by joining Okazaki fragments on the lagging strand and repairing any breaks in the DNA.
Primer RNA is a short segment of RNA that serves as a starting point for DNA synthesis, providing a free 3'-OH group for DNA polymerase to begin adding DNA nucleotides.

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Key Concepts

Here are the essential concepts you must grasp in order to answer the question correctly.

Okazaki Fragments

Okazaki fragments are short sequences of DNA nucleotides synthesized on the lagging strand during DNA replication. They are formed because DNA polymerase can only add nucleotides in a 5' to 3' direction, necessitating the synthesis of these fragments in a discontinuous manner. Each fragment is later joined together to create a continuous strand, highlighting their crucial role in ensuring accurate DNA replication.
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DNA Ligase

DNA ligase is an essential enzyme that facilitates the joining of Okazaki fragments by forming phosphodiester bonds between adjacent nucleotides. This enzyme plays a critical role in sealing nicks in the DNA backbone, ensuring the integrity and continuity of the newly synthesized DNA strand. Without DNA ligase, the replication process would result in incomplete and fragmented DNA.
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Primer RNA

Primer RNA, or RNA primers, are short strands of RNA synthesized by the enzyme primase that provide a starting point for DNA polymerase during DNA replication. These primers are necessary because DNA polymerase cannot initiate synthesis on its own; it requires a free 3' hydroxyl group to add nucleotides. The presence of primer RNA is vital for the initiation of both leading and lagging strand synthesis.
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