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Ch. 11 - DNA Replication and Recombination
Chapter 11, Problem 18

Why is DNA synthesis expected to be more complex in eukaryotes than in bacteria? How is DNA synthesis similar in the two types of organisms?

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Identify the structural differences between eukaryotic and bacterial cells, such as the presence of a nucleus and organelles in eukaryotes.
Consider the size and complexity of eukaryotic genomes compared to bacterial genomes, noting that eukaryotic genomes are generally larger and contain more non-coding regions.
Examine the number of origins of replication: eukaryotes have multiple origins of replication on each chromosome, while bacteria typically have a single origin of replication on their circular chromosome.
Discuss the similarities in the basic mechanism of DNA synthesis, such as the use of DNA polymerases, the requirement for a primer, and the directionality of synthesis (5' to 3') in both eukaryotes and bacteria.
Explore the role of similar enzymes and proteins involved in DNA replication, like helicases, primases, and ligases, which are present in both eukaryotic and bacterial DNA synthesis processes.

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Key Concepts

Here are the essential concepts you must grasp in order to answer the question correctly.

Eukaryotic vs. Prokaryotic Cells

Eukaryotic cells, such as those in plants and animals, have a defined nucleus and multiple linear chromosomes, while prokaryotic cells, like bacteria, lack a nucleus and typically have a single circular chromosome. This structural difference contributes to the complexity of DNA synthesis in eukaryotes, as they must manage multiple origins of replication and coordinate the synthesis of chromatin.
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DNA Replication Mechanism

DNA replication involves unwinding the double helix and synthesizing new strands using existing strands as templates. Both eukaryotes and bacteria utilize similar enzymes, such as DNA polymerases, to facilitate this process. However, eukaryotic replication is more intricate due to the presence of additional regulatory proteins and the need to replicate chromatin.
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Regulation of DNA Synthesis

In eukaryotes, DNA synthesis is tightly regulated through various checkpoints and signaling pathways to ensure proper cell cycle progression and genomic integrity. This regulation is less complex in bacteria, where replication can occur more rapidly and is often coupled with cell division. Understanding these regulatory mechanisms is crucial for comprehending the differences in DNA synthesis between these two types of organisms.
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Related Practice
Textbook Question
List the proteins that unwind DNA during in vivo DNA synthesis. How do they function?
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Textbook Question
Define and indicate the significance of (a) Okazaki fragments, (b) DNA ligase, and (c) primer RNA during DNA replication.
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Textbook Question
Outline the current model for DNA synthesis.
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Textbook Question
Suppose that E. coli synthesizes DNA at a rate of 100,000 nucleotides per minute and takes 40 minutes to replicate its chromosome. (a) How many base pairs are present in the entire E. coli chromosome? (b) What is the physical length of the chromosome in its helical configuration—that is, what is the circumference of the chromosome if it were opened into a circle?
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Textbook Question

DNA supercoiling, which occurs when coiling tension is generated ahead of the replication fork, is relieved by DNA gyrase. Supercoiling may also be involved in transcription regulation. Researchers discovered that enhancers operating over a long distance (2500 bp) are dependent on DNA supercoiling, while enhancers operating over shorter distances (110 bp) are not so dependent [Liu et al. (2001). Proc. Natl. Acad. Sci. USA 98:14,883–14,888]. Using a diagram, suggest a way in which supercoiling may positively influence enhancer activity over long distances.

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Textbook Question
Several temperature-sensitive mutant strains of E. coli display the following characteristics. Predict what enzyme or function is being affected by each mutation. Newly synthesized DNA contains many mismatched base pairs.
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