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Ch. 21 - Genomic Analysis

Chapter 20, Problem 31

Transcription factors play key roles in the regulation of gene expression, but to do so, they must act within the nucleus. Like most proteins, however, transcription factors are translated in the cytoplasm. To enter the nucleus, transcription factors contain nuclear localization signals, which in some cases can work only when bound to some other molecule such as a steroid hormone. After entering the nucleus, transcription factors must bind to appropriate DNA sites and must interact with other transcription proteins at promoters, enhancers, and silencers. Transcription factors then activate or repress transcription through their activation or repression domains. Many drug therapies target transcription factors. Based on the information provided above, suggest three specific mechanisms through which a successful drug therapy, targeted to a transcription factor, might work.

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Hello everyone and welcome to today's video. Today we have that transcription factors or proteins that regulate the transcription process. So how do transcription factors differ from other gene regulators such as coated and kis? Well, let's go over each of our answer choices so that we may solve this problem. Let's begin by answer choice. A we have transcription factors are generated in trace amounts or in very low amounts. This is going to be an incorrect answer choice because transcription factors are actually generated in very high amounts as they undergo the process of transcription in the cell, which is a very important process because of this, we're going to cancel this out. Then we have the transcription factors and need stimulants before they are produced. Well, this is actually going to be incorrect as well. There is no stimulus being involved in the process of making these transcription factors. Because of this. We're going to cancel this question out. Then we have c transcription factors are only found in ate. Well, no, this is incorrect as well because they are also found in ears as well as a K A and other forms of life because of this, we're going to cancel this out as well. Then we have the transcription factors contain at least one DNA binding domain. Well as the question states, these transcription factors are going to be involved in transcription. And transcription is a process of transforming DNA. To irony, these transcription factors need at least one DNA binding domain so that they can bind into this DNA and perform the transcription process because of this. This is going to be our correct answer choice and we're going to highlight it as a final answer to our question. I really hope this helped you and I hope to see you on the next one.
Related Practice
Textbook Question

Recall that when the HGP was completed, more than 40 percent of the genes identified had unknown functions. The PANTHER database provides access to comprehensive and current functional assignments for human genes (and genes from other species).

Go to http://www.pantherdb.org/data/. In the frame on the left side of the screen locate the 'Quick links' and use the 'Whole genome function views' link to a view of a pie chart of current functional classes for human genes. Mouse over the pie chart to answer these questions. What percentage of human genes encode transcription factors? Cytoskeletal proteins? Transmembrane receptor regulatory/adaptor proteins?

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Textbook Question

Although a single activator may bind many enhancers in the genome to control several target genes, in many cases, the enhancers have some sequence conservation but are not all identical. Keeping this in mind, consider the following hypothetical example:

- Undifferentiated cells adopt different fates depending on the concentration of activator protein, Act1.
- A high concentration of Act1 leads to cell fate 1, an intermediate level leads to cell fate 2, and low levels to cell fate 3.
- Research shows that Act1 regulates the expression of three different target genes (A, B, and C) with each having an enhancer recognized by Act1 but a slightly different sequence that alters the affinity of Act1 for the enhancer. Act1 has a high affinity for binding the enhancer for gene A, a low affinity for the gene B enhancer, and an intermediate affinity for the gene C enhancer.

From these data, speculate on how Act1 concentrations can specify different cell fates through these three target genes? Furthermore, which target genes specify which fates?

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Textbook Question

Hereditary spherocytosis (HS) is a disorder characterized by sphere-shaped red blood cells, anemia, and other abnormal traits. Ankyrin-1 (ANK1) is a protein that links membrane proteins to the cytoskeleton. Loss of this activity is associated biochemically to HS. However, Gallagher et al. (2010) (J. Clin. Invest. 120:4453–4465) show that HS can also be caused by mutations within a region from -282 to -101 relative to the transcriptional start site, which lead to constitutive transcriptional repression in erythroid cells due to local chromatin condensation. Propose a hypothesis for the function of the -282 to -101 region of the ANK1 gene.

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