Chapter 17, Problem 22
Explain how the following mutations would affect transcription of the yeast GAL1 gene in the presence of galactose.
A deletion of the entire GAL3 gene.
Video transcript
Explain how the following mutations would affect transcription of the yeast GAL1 gene in the presence of galactose.
A deletion of one of the four UASG elements upstream from the GAL1 gene.
What role do ubiquitin ligases play in the regulation of gene expression?
Explain how the following mutations would affect transcription of the yeast GAL1 gene in the presence of galactose.
A deletion within the GAL4 gene that removes the region encoding amino acids 1 to 100.
Much of what we know about gene interactions in development has been learned using nematodes, yeast, flies, and bacteria. This is due, in part, to the relative ease of genetic manipulation of these well-characterized genomes. However, of great interest are gene interactions involving complex diseases in humans. Wang and White [(2011). Nature Methods 8(4):341–346] describe work using RNAi to examine the interactive proteome in mammalian cells. They mention that knockdown inefficiencies and off-target effects of introduced RNAi species are areas that need particular improvement if the methodology is to be fruitful.
How might one use RNAi to study developmental pathways?
Much of what we know about gene interactions in development has been learned using nematodes, yeast, flies, and bacteria. This is due, in part, to the relative ease of genetic manipulation of these well-characterized genomes. However, of great interest are gene interactions involving complex diseases in humans. Wang and White [(2011). Nature Methods 8(4):341–346] describe work using RNAi to examine the interactive proteome in mammalian cells. They mention that knockdown inefficiencies and off-target effects of introduced RNAi species are areas that need particular improvement if the methodology is to be fruitful.
Comment on how 'knockdown inefficiencies' and 'off-target effects' would influence the interpretation of results.
In this chapter, we discussed several specific cis-elements in mRNAs that regulate splicing, stability, decay, localization, and translation. However, it is likely that many other uncharacterized cis-elements exist. One way in which they may be characterized is through the use of a reporter gene such as the gene encoding the green fluorescent protein (GFP) from jellyfish. GFP emits green fluorescence when excited by blue light. Explain how one might be able to devise an assay to test for the effect of various cis-elements on posttranscriptional gene regulation using cells that transcribe a GFP mRNA with genetically inserted cis-elements.