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Ch. 17+18 - Transcriptional Regulation in Eukaryotes

Chapter 17, Problem 22

Explain how the following mutations would affect transcription of the yeast GAL1 gene in the presence of galactose.

A deletion of the entire GAL3 gene.

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Hey everyone, Let's take a look at this question together. G A L three encodes a transcription regulator in the G A. L. Gene activation in the presence of galactose. The deletion of the entire G A L three gene leads to what, So let's recall what we've learned about the G A L three gene and what a deletion of the entire G A L three gene would lead to. So let's use the information we know about. If we had a deletion of the entire G A L three gene and take a look at the following answer. So starting off with answer choice A we see stable G A L A T to G A L three complex formation enhancing the G A. L. Gene expression. Now we know that if we have that deletion of the entire G L three gene, we'll end up with a non formation of GAL GAL three complex, which would mean that we don't have that enhancing of the G A. L. Gene expression. So answer choice A is incorrect. Answer choice B says G A L A T G a L three complex is not formed enhancing the G A. L. Gene expression. We know that because we have the deletion of the entire G A L three gene and we have that non formation that means that the enhancing of the G A. L. Gene expression is not allowed. And so answer choice B is also incorrect and then answer choice C says G A L a t g a L three complex is not formed, inhibiting the G L gene expression, which we know is a true statement because the g a l a t e g a L three complex is not formed, inhibiting the JL gene expression because it leads to the formation of the three A l GAL four complex, which this complex inhibits between expression. And so answer choice C is a true statement about what would happen if we deleted that entire GAL three gene. So answer choice C is the correct answer. I hope you found this video to be helpful. Thank you and goodbye.
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Textbook Question

Explain how the following mutations would affect transcription of the yeast GAL1 gene in the presence of galactose.

A deletion of one of the four UASG elements upstream from the GAL1 gene.

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What role do ubiquitin ligases play in the regulation of gene expression?

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Textbook Question

Explain how the following mutations would affect transcription of the yeast GAL1 gene in the presence of galactose.

A deletion within the GAL4 gene that removes the region encoding amino acids 1 to 100.

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Textbook Question

Much of what we know about gene interactions in development has been learned using nematodes, yeast, flies, and bacteria. This is due, in part, to the relative ease of genetic manipulation of these well-characterized genomes. However, of great interest are gene interactions involving complex diseases in humans. Wang and White [(2011). Nature Methods 8(4):341–346] describe work using RNAi to examine the interactive proteome in mammalian cells. They mention that knockdown inefficiencies and off-target effects of introduced RNAi species are areas that need particular improvement if the methodology is to be fruitful.

How might one use RNAi to study developmental pathways?

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Much of what we know about gene interactions in development has been learned using nematodes, yeast, flies, and bacteria. This is due, in part, to the relative ease of genetic manipulation of these well-characterized genomes. However, of great interest are gene interactions involving complex diseases in humans. Wang and White [(2011). Nature Methods 8(4):341–346] describe work using RNAi to examine the interactive proteome in mammalian cells. They mention that knockdown inefficiencies and off-target effects of introduced RNAi species are areas that need particular improvement if the methodology is to be fruitful.

Comment on how 'knockdown inefficiencies' and 'off-target effects' would influence the interpretation of results.

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Textbook Question

In this chapter, we discussed several specific cis-elements in mRNAs that regulate splicing, stability, decay, localization, and translation. However, it is likely that many other uncharacterized cis-elements exist. One way in which they may be characterized is through the use of a reporter gene such as the gene encoding the green fluorescent protein (GFP) from jellyfish. GFP emits green fluorescence when excited by blue light. Explain how one might be able to devise an assay to test for the effect of various cis-elements on posttranscriptional gene regulation using cells that transcribe a GFP mRNA with genetically inserted cis-elements.

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