Table of contents
- 1. Introduction to Genetics51m
- 2. Mendel's Laws of Inheritance3h 37m
- 3. Extensions to Mendelian Inheritance2h 41m
- 4. Genetic Mapping and Linkage2h 28m
- 5. Genetics of Bacteria and Viruses1h 21m
- 6. Chromosomal Variation1h 48m
- 7. DNA and Chromosome Structure56m
- 8. DNA Replication1h 10m
- 9. Mitosis and Meiosis1h 34m
- 10. Transcription1h 0m
- 11. Translation58m
- 12. Gene Regulation in Prokaryotes1h 19m
- 13. Gene Regulation in Eukaryotes44m
- 14. Genetic Control of Development44m
- 15. Genomes and Genomics1h 50m
- 16. Transposable Elements47m
- 17. Mutation, Repair, and Recombination1h 6m
- 18. Molecular Genetic Tools19m
- 19. Cancer Genetics29m
- 20. Quantitative Genetics1h 26m
- 21. Population Genetics50m
- 22. Evolutionary Genetics29m
17. Mutation, Repair, and Recombination
Induced Mutations
Problem 34
Textbook Question
Using your knowledge of DNA repair pathways, choose the pathway that would be used to repair the following types of DNA damage. Explain your reasoning.
a thymine dimer induced as a result of UV exposure

1
Understand the type of DNA damage: A thymine dimer is a covalent bond formed between two adjacent thymine bases on the same DNA strand, caused by UV radiation. This distorts the DNA helix and interferes with replication and transcription.
Identify the DNA repair pathway: Thymine dimers are typically repaired by the nucleotide excision repair (NER) pathway, which is specialized for removing bulky lesions that distort the DNA helix.
Explain the NER process: In the NER pathway, a multi-enzyme complex recognizes the distortion in the DNA helix caused by the thymine dimer. The damaged strand is unwound, and a small section of the strand containing the dimer is excised.
Describe the repair synthesis: After the damaged section is removed, DNA polymerase fills in the gap by synthesizing new DNA using the undamaged complementary strand as a template.
Conclude with ligation: Finally, DNA ligase seals the newly synthesized DNA into the existing strand, restoring the integrity of the DNA molecule.

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Key Concepts
Here are the essential concepts you must grasp in order to answer the question correctly.
Thymine Dimers
Thymine dimers are a type of DNA damage that occurs when two adjacent thymine bases bond together due to ultraviolet (UV) light exposure. This abnormal bonding distorts the DNA structure, leading to replication errors if not repaired. Understanding the formation and consequences of thymine dimers is crucial for identifying the appropriate repair mechanisms.
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DNA Structure
Nucleotide Excision Repair (NER)
Nucleotide excision repair (NER) is a DNA repair mechanism that specifically targets bulky DNA lesions, such as thymine dimers. The process involves recognizing the distortion in the DNA helix, excising the damaged segment, and synthesizing new DNA to fill the gap. NER is essential for maintaining genomic stability and preventing mutations caused by UV-induced damage.
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Repair Pathways
DNA Repair Pathways
DNA repair pathways are cellular mechanisms that detect and correct damage to the DNA structure. These pathways include various processes such as base excision repair, nucleotide excision repair, and mismatch repair, each tailored to specific types of damage. Understanding these pathways is vital for comprehending how cells maintain their genetic integrity in response to environmental stressors like UV radiation.
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Textbook Question
Alkaptonuria is a human autosomal recessive disorder caused by mutation of the HAO gene that encodes the enzyme homogentisic acid oxidase. A map of the HAO gene region reveals four BamHI restriction sites (B1 to B4) in the wild-type allele and three BamHI restriction sites in the mutant allele. BamHI utilizes the restriction sequence 5′-GGATCC-3′. The BamHI restriction sequence identified as B3 is altered to 5′-GGAACC-3′ in the mutant allele. The mutation results in a Ser-to-Thr missense mutation. Restriction maps of the two alleles are shown below, and the binding sites of two molecular probes (probe A and probe B) are identified.DNA samples taken from a mother (M), father (F), and two children (C1 and C2) are analyzed by Southern blotting of BamHI-digested DNA. The gel electrophoresis results are illustrated.Using A to represent the wild-type allele and a for the mutant allele, identify the genotype of each family member. Identify any family member who is alkaptonuric.
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