In this video, we're going to begin our discussion on the amino acid one-letter codes for all 20 of the standard amino acids. So it turns out that the one-letter amino acid codes are just a little bit more challenging to memorize than the three-letter amino acid codes. But that just has to do with the fact that there are more one-letter abbreviations of phonetic origin. And so, recall with our previous lessons on the three-letter amino acid codes, that there were only 4 amino acids with phonetic three-letter abbreviations. But with our one-letter amino acid codes, there are actually 8 amino acids with phonetic one-letter abbreviations. So that's double the amount, and that's why they're a little bit more challenging to memorize. But if we're able to commit all 8 of these one-letter abbreviations of phonetic origin to memory, then memorizing all of the other one-letter abbreviations is going to be super, super easy for you guys. And we'll be able to see how that works in our next lesson video. But for now, down below in this box, we have the 8 one-letter symbols of phonetic origin organized in alphabetical order. And so, what you'll see is in the first blank for each of these amino acids, we need to think what letter we could place to fill the sound phonetically and reveal the one-letter code in the second blank. And so for arginine, it's pretty clear that if we put an 'R' into this blank here, we can fill the sound phonetically. And so its name its sound is going to be arginine, and its one-letter code will be 'R'. Now, for asparagine, we have this blank to fill. And so if we put an 'N' into this blank, we can fill the sound phonetically for asparagine, and its one-letter code is 'N'. For aspartic acid, if we put a 'D' here for aspartic, it will reveal its one-letter code of 'D'. Now for glutamic acid, in the glutamic part, if we put an 'E' down here, we can fill the sound phonetically to give it a one-letter symbol with an 'E'. And for glutamine, up at the top here, if we put a 'Q' in here, it'll actually fill the sound phonetically. So it'll say glutamine. And glutamine, glutamine sound very similar. And so, its one-letter code is 'Q'. Now, for Phenylalanine, if we put an 'F' in here into this first blank, we can fill the sound phonetically and give it a one-letter code of 'F'. Now, for tryptophan, we have to think how Bugs Bunny would say tryptophan. And the way that he would say it is Twiptophan with a 'W'. And so if we were to put a 'W' into this blank, it'll fill the sound phonetically and its one-letter code is 'W'. And then, of course, last but not least, tyrosine's one-letter code is going to be 'Y', and we can fill the sound phonetically here with a 'Y'. And so, essentially down below in this image, what we have is a mnemonic to help you guys memorize these 8 amino acids with phonetic one-letter abbreviations. And that mnemonic is just 'nerdy WQF', or 'nerdy Waldo qualifies in Fortnite'. And so, most of you guys know what Fortnite is, but for those of you that don't, Fortnite is a competitive video game. And so, most of you guys have either played Fortnite, know someone that plays Fortnite, or know someone that has played Fortnite. But none of you guys know anybody that's played Fortnite as much as Waldo. And to tell you the truth, that's why it's so hard to find Waldo in the first place because he spends all of his time playing Fortnite up in his room all day and night. And so, with this mnemonic over here, each letter in the word nerdy represents one of the one-letter abbreviations of phonetic origin. And then WQF, of course, represents, tryptophan, glutamine, and phenylalanine, which are also one-letter abbreviations of phonetic origin. And so you can see here, we have this Waldo here, and he's pretty nerdy. He's got these glasses on and he's holding up his number one finger and he's got this sign here, this name tag that says, hello. My name is Waldo. And he's saying I'm nerdy. I qualified in Fortnite. And so by qualified, what he really means is first place, and first place can help us remember that this mnemonic here is for the one-letter amino acid codes, the first place. And that's why he's holding up number one for the one-letter amino acid codes. And so if you guys can remember, 'nerdy WQF' or 'nerdy Waldo qualifies in Fortnite', then you'll be able to remember the 8 amino acids with one-letter abbreviations of phonetic origin. And remember, these are the 8 abbreviations that you really want to spend most of your time committing to memory. Because once you've committed these 8 to memory, then memorizing all of the other amino acids is going to be much, much easier. And we'll be able to see how that works better in our next lesson video. So I'll see you guys in our next video where we'll be able to get some practice with these concepts.
- 1. Introduction to Biochemistry4h 34m
- What is Biochemistry?5m
- Characteristics of Life12m
- Abiogenesis13m
- Nucleic Acids16m
- Proteins12m
- Carbohydrates8m
- Lipids10m
- Taxonomy10m
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- 2. Water3h 23m
- 3. Amino Acids8h 10m
- Amino Acid Groups8m
- Amino Acid Three Letter Code13m
- Amino Acid One Letter Code37m
- Amino Acid Configuration20m
- Essential Amino Acids14m
- Nonpolar Amino Acids21m
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- Charged Amino Acids40m
- How to Memorize Amino Acids1h 7m
- Zwitterion33m
- Non-Ionizable Vs. Ionizable R-Groups11m
- Isoelectric Point10m
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- 6. Enzymes and Enzyme Kinetics13h 38m
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- 9. Carbohydrates7h 49m
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- 12. Biosignaling9h 45m
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- Insulin28m
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- Insulin Signaling on Glucose Metabolism57m
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- Insulin Signaling as a Growth Factor1h 1m
- Recap of Insulin Signaling As A Growth Factor9m
- Recap of Insulin Signaling1m
- Jak-Stat Signaling25m
- Lipid Hormone Signaling15m
- Summary of Biosignaling13m
- Signaling Defects & Cancer20m
- Review 1: Nucleic Acids, Lipids, & Membranes2h 47m
- Nucleic Acids 19m
- Nucleic Acids 211m
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- Membrane Structure 110m
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- Practice - Nucleic Acids 111m
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- Lipids11m
- Practice - Membrane Structure 17m
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- Review 2: Biosignaling, Glycolysis, Gluconeogenesis, & PP-Pathway3h 12m
- Biosignaling 19m
- Biosignaling 219m
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- Biosignaling 49m
- Glycolysis 17m
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- Gluconeogenesis 18m
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- Pentose Phosphate Pathway15m
- Practice - Biosignaling13m
- Practice - Bioenergetics 110m
- Practice - Bioenergetics 216m
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- Review 3: Pyruvate & Fatty Acid Oxidation, Citric Acid Cycle, & Glycogen Metabolism2h 26m
- Pyruvate Oxidation9m
- Citric Acid Cycle 114m
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- Citric Acid Cycle 411m
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- Glycogen Metabolism 16m
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- Fatty Acid Oxidation 111m
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- Citric Acid Cycle Practice 17m
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- Glucose and Glycogen Regulation Practice 14m
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- Fatty Acid Oxidation Practice 14m
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- Review 4: Amino Acid Oxidation, Oxidative Phosphorylation, & Photophosphorylation1h 48m
- Amino Acid Oxidation 15m
- Amino Acid Oxidation 211m
- Oxidative Phosphorylation 18m
- Oxidative Phosphorylation 210m
- Oxidative Phosphorylation 310m
- Oxidative Phosphorylation 47m
- Photophosphorylation 15m
- Photophosphorylation 29m
- Photophosphorylation 310m
- Practice: Amino Acid Oxidation 12m
- Practice: Amino Acid Oxidation 22m
- Practice: Oxidative Phosphorylation 15m
- Practice: Oxidative Phosphorylation 24m
- Practice: Oxidative Phosphorylation 35m
- Practice: Photophosphorylation 15m
- Practice: Photophosphorylation 21m
Amino Acid One Letter Code: Study with Video Lessons, Practice Problems & Examples
Understanding the one-letter codes for amino acids is essential for protein analysis. Eight amino acids have phonetic one-letter codes, making them crucial to memorize: Arginine (R), Asparagine (N), Aspartic acid (D), Glutamic acid (E), Glutamine (Q), Phenylalanine (F), Tryptophan (W), and Tyrosine (Y). The remaining amino acids use their first letters as codes, except for Lysine, which is K. This systematic approach simplifies amino acid identification, aiding in studies of protein structure and function.
Phonetic 1-letter Amino Acid Abbreviations
Video transcript
Which of the following amino acid 1-letter symbols is of phonetic origin?
Other Amino Acid 1-Letter Codes
Video transcript
So in our last lesson video, we talked about the 8 one-letter amino acid abbreviations of phonetic origin. And remember, it's these 8 that you really want to spend most of your time studying and memorizing because those are the hard ones to memorize. And once you've committed those 8 to memory, then memorizing all of the other one-letter abbreviations are going to be super easy for you guys as we'll see in this video. And so, what we've done is we've taken all the other one-letter codes and abbreviations and we've broken them up into 3 different groups and color-coded them as you can see here. So in our first group, we have the green group and what you'll see is that this green color here corresponds with the green color that we see throughout our image in our example down below. Now, our next group, what we have is our light blue group and again, this light blue color corresponds with the light blue color throughout our image in our example below. And then our yellow group here corresponds with the yellow amino acid in our image below. And so, what you'll also notice is that over here in pink, what we have are the 8 one-letter amino acid abbreviations of phonetic origin. And we already talked about those in our previous video, so these one-letter abbreviations are already provided for us. And so we're not going to be focusing on these, we're going to be focusing on the ones that we haven't yet talked about, which are the ones that are in blanks throughout our image. And so, in our first group, we have the green group, and what you'll see is that for amino acids with unique first letters, their one-letter code or symbol is literally just their first letter, and this applies to all of the ones that are in green in our example below. So what you'll see is that cysteine over here has a first letter of c, which is a unique first letter amongst all of the other first letters for all the other amino acids. And because it has a unique first letter, its first letter is going to be its one-letter code. And the same applies for histidine, isoleucine, methionine, serine, and valine, all of which have unique first letters and their first letter is used as their one-letter abbreviation. So pretty easy. Right? So in our next group, what we have is the light blue group. And in this group, what we'll realize is that some amino acid first letters are not unique, but the first letters are still used for these amino acids and that's because these amino acids are more commonly found in proteins throughout nature. And so, for example, both leucine and lysine start with the letter l, but overall, leucine is more commonly found in proteins than lysine. And so for that reason, leucine is prioritized with the one-letter symbol of l. And the same applies for all of the amino acids that are shaded in blue in our example below. And so, what you'll see is that alanine over here has a first letter of a, which is not a unique first letter. But alanine's first letter is still used as its one-letter code. And again, that has to do with the fact that alanine is more commonly found in proteins throughout nature, than these other three amino acids that also start with the first letter a. The same applies for glycine. Glycine's first letter is g and it is not a unique first letter, but it's still used as its one-letter code because it's more commonly found. Leucine, we just mentioned above in our example, which is more common than lysine. Proline is more common than phenylalanine, and threonine is more common than tryptophan or tyrosine. And so, at this point, what you'll notice is that we've assigned one-letter abbreviations for 19 out of 20 amino acids. And so far, all we've said is that it's just the 8 of phonetic origin and all the other ones are just the first letter so far, so super easy to remember. Remember. And so the one amino acid that has not been assigned a code yet is lysine, which is this yellow one here and it's found in this group all by itself. And so at this point, only a few letters remained in the alphabet that were not already assigned to an amino acid. And so literally, the letter k was chosen for lysine because it's the one that was closest to l, which is lysine's first letter, that wasn't already taken by another amino acid. And so lysine's one-letter abbreviation is literally just the letter k. And so, again, when you're trying to memorize these one-letter abbreviations, instead of trying to memorize all 20 of them, remember that you want to memorize the ones that are in pink. So all the ones that are in pink here are the ones that have one-letter abbreviations of phonetic origin, and there are only 8 of those. So once you've memorized those 8, all you need to know is that lysine's one-letter code is k and then all the other ones are just the first letter. So, the ones that are in the blue categories and the green categories, there's really no need to try to memorize those because they're literally the first letter of the amino acid itself. So, hopefully that'll help
Which 1-letter-code is unique in that it is neither the first letter of the amino acid nor phonetic in origin?
Convert the following amino acids into their 1-letter codes: Glycine, Isoleucine, Valine, Tryptophan, Proline.
Complete the amino acid abbreviation chart below from memory.
Problem Transcript
Convert the following 3-letter amino acid codes into 1-letter codes to answer the following question:
How does NASA organize a party?
Problem Transcript
Convert the following 3-letter amino acid codes into 1-letter codes to reveal the sentence.
Problem Transcript
Match the amino acid with the appropriate 1-letter-code.
Tyrosine ____ 1. W
Glutamine ____ 2. P
Glutamic Acid ____ 3. F
Proline ____ 4. Y
Tryptophan ____ 5. Q
Phenylalanine ____ 6. E
Problem Transcript
Here’s what students ask on this topic:
What are the one-letter codes for the 20 standard amino acids?
The one-letter codes for the 20 standard amino acids are as follows: Arginine (R), Asparagine (N), Aspartic acid (D), Glutamic acid (E), Glutamine (Q), Phenylalanine (F), Tryptophan (W), Tyrosine (Y), Cysteine (C), Histidine (H), Isoleucine (I), Methionine (M), Serine (S), Valine (V), Alanine (A), Glycine (G), Leucine (L), Proline (P), Threonine (T), and Lysine (K). The codes are derived either from the first letter of the amino acid or phonetic origins, making it easier to identify amino acids in protein sequences.
Why is it important to memorize the one-letter codes for amino acids?
Memorizing the one-letter codes for amino acids is crucial for efficiently analyzing and interpreting protein sequences. These codes are widely used in bioinformatics, molecular biology, and biochemistry to represent amino acids in a compact form. Understanding these codes allows students and researchers to quickly identify amino acids in protein structures, facilitating studies on protein function, interactions, and evolutionary relationships. Additionally, knowing these codes helps in writing and reading scientific literature where protein sequences are often presented using one-letter abbreviations.
What mnemonic can help memorize the phonetic one-letter codes for amino acids?
A useful mnemonic to memorize the phonetic one-letter codes for amino acids is 'nerdy WQF' or 'nerdy Waldo qualifies in Fortnite.' This mnemonic helps remember the eight amino acids with phonetic one-letter codes: Arginine (R), Asparagine (N), Aspartic acid (D), Glutamic acid (E), Glutamine (Q), Phenylalanine (F), Tryptophan (W), and Tyrosine (Y). By associating these codes with a memorable phrase, students can more easily recall the one-letter abbreviations during exams and practical applications.
How are the one-letter codes for amino acids determined?
The one-letter codes for amino acids are determined based on two main criteria: phonetic origin and uniqueness of the first letter. Eight amino acids have phonetic one-letter codes: Arginine (R), Asparagine (N), Aspartic acid (D), Glutamic acid (E), Glutamine (Q), Phenylalanine (F), Tryptophan (W), and Tyrosine (Y). For the remaining amino acids, the first letter of their name is used as their one-letter code if it is unique. If the first letter is not unique, the more commonly found amino acid in proteins is prioritized. Lysine is an exception, using 'K' as its code because 'L' is already taken by Leucine.
What are the challenges in memorizing the one-letter codes for amino acids?
The main challenge in memorizing the one-letter codes for amino acids lies in the phonetic origins of some codes, which are not always intuitive. For example, Glutamine is represented by 'Q' and Tryptophan by 'W,' which do not directly correspond to their names. Additionally, distinguishing between amino acids with similar starting letters, such as Leucine (L) and Lysine (K), can be difficult. Using mnemonics and understanding the rationale behind the codes can help overcome these challenges, making it easier to recall the correct one-letter abbreviations.